It turns out you have to get phpdoc from svn and use that.
To checkout the doc tree (had to upgrade from the stock svn on OS X leopard first - thanks homebrew!)
svn co http://svn.php.net/repository --depth empty phpdoc
svn co http://svn.php.net/repository/phpdoc/en/trunk --depth infinity phpdoc/en
svn co http://svn.php.net/repository/phpdoc/doc-base/trunk --depth infinity phpdoc/doc-base
And install phd (I had to install sqlite3 first - yes I'm using ports for that)
sudo port install php5-sqlite +debug
sudo pear install doc.php.net/phd-beta
Create an XML template
/path/to/svn/phpdoc/php -d debug_mode=1 -d extension_dir=modules/ -d extension=myext.so /Users/jmeredith/src/php/phpdoc/doc-base/scripts/docgen/docgen.php --output tmp --extension myext
Now you have to merge that into the main php docs
cp -rp tmp /Users/jmeredith/src/php/phpdoc/en/reference/myext
Edit phpdoc/manual.xml.in and add a reference for your extension (I added mine under database vendors)
&reference.magneto.book;
In phpdoc/en/reference add a file called entities.myext.xml - I'm still tinkering with what needs to go in there, base it on one of the other files in the same directory.
Finally, run phd
phd -d /Users/jmeredith/src/php/phpdoc/doc-base/.manual.book.myext.xml
It creates files in a directory named output. Now all I need to do is work out what to put where to get decent output.
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